diff --git a/src/machine/machine_state.rs b/src/machine/machine_state.rs
index 148a9d8f..ca88a6ea 100644
--- a/src/machine/machine_state.rs
+++ b/src/machine/machine_state.rs
@@ -745,25 +745,50 @@ impl MachineState {
         stream: Stream,
         indices: &mut IndexStore,
     ) -> CallResult {
-        if let Stream::Readline(ptr) = stream {
-            let readline = unsafe { ptr.as_ptr().as_mut() }.unwrap();
-            readline.set_atoms_for_completion(&self.atom_tbl);
-            return self.read_term(
+        match stream {
+            #[cfg(feature = "http")]
+            Stream::HttpRead(_) => self.read_term(
                 stream,
                 indices,
                 MachineState::read_term_from_user_input_eof_handler,
-            );
-        }
-
-        if let Stream::Byte(_) = stream {
-            return self.read_term(
+            ),
+            #[cfg(feature = "tls")]
+            Stream::NamedTls(_) => self.read_term(
                 stream,
                 indices,
                 MachineState::read_term_from_user_input_eof_handler,
-            );
-        }
+            ),
+            Stream::Readline(ptr) => {
+                let readline = unsafe { ptr.as_ptr().as_mut() }.unwrap();
+                readline.set_atoms_for_completion(&self.atom_tbl);
+                self.read_term(
+                    stream,
+                    indices,
+                    MachineState::read_term_from_user_input_eof_handler,
+                )
+            }
+            Stream::Byte(_)
+            | Stream::InputChannel(_)
+            | Stream::InputFile(_)
+            | Stream::NamedTcp(_)
+            | Stream::Null(_)
+            | Stream::PipeReader(_)
+            | Stream::StaticString(_) => self.read_term(
+                stream,
+                indices,
+                MachineState::read_term_from_user_input_eof_handler,
+            ),
+            _ => {
+                let stub = functor_stub(atom!("read_term_from_user_input"), 3);
+                let err = self.permission_error(
+                    Permission::InputStream,
+                    atom!("stream"),
+                    atom_as_cell!(atom!("user_input")),
+                );
 
-        unreachable!("Stream must be a Stream::Readline(_)")
+                Err(self.error_form(err, stub))
+            }
+        }
     }
 
     pub fn read_term_eof_handler(&mut self, mut stream: Stream) -> Result<OnEOF, MachineStub> {
diff --git a/src/machine/system_calls.rs b/src/machine/system_calls.rs
index a2a8576b..b0c0044d 100644
--- a/src/machine/system_calls.rs
+++ b/src/machine/system_calls.rs
@@ -6735,7 +6735,10 @@ impl Machine {
 
     #[inline(always)]
     pub(crate) fn read_query_term(&mut self) -> CallResult {
-        self.user_input.reset();
+        match self.user_input {
+            Stream::Byte(_) | Stream::Readline(_) => self.user_input.reset(),
+            _ => true,
+        };
 
         set_prompt(true);
         // let result = self.machine_st.read_term(self.user_input, &mut self.indices);
@@ -6747,7 +6750,10 @@ impl Machine {
         match result {
             Ok(()) => Ok(()),
             Err(e) => {
-                self.user_input.reset();
+                match self.user_input {
+                    Stream::Byte(_) | Stream::Readline(_) => self.user_input.reset(),
+                    _ => true,
+                };
                 Err(e)
             }
         }
diff --git a/tests/scryer/cli/issues/set_input_from_input_file_stream.in/input b/tests/scryer/cli/issues/set_input_from_input_file_stream.in/input
new file mode 100644
index 00000000..60c0d887
--- /dev/null
+++ b/tests/scryer/cli/issues/set_input_from_input_file_stream.in/input
@@ -0,0 +1 @@
+true.
\ No newline at end of file
diff --git a/tests/scryer/cli/issues/set_input_from_input_file_stream.in/set_input_from_top-level.pl b/tests/scryer/cli/issues/set_input_from_input_file_stream.in/set_input_from_top-level.pl
new file mode 100644
index 00000000..b38f2223
--- /dev/null
+++ b/tests/scryer/cli/issues/set_input_from_input_file_stream.in/set_input_from_top-level.pl
@@ -0,0 +1,10 @@
+:- use_module(library(files)).
+
+main :-
+    current_input(UserStream),
+    open('./input', read, InputStream),
+    set_input(InputStream),
+    read_term(T, []), write(T),
+    set_input(UserStream).
+
+:- initialization(main).
diff --git a/tests/scryer/cli/issues/set_input_from_input_file_stream.stderr b/tests/scryer/cli/issues/set_input_from_input_file_stream.stderr
new file mode 100644
index 00000000..e69de29b
diff --git a/tests/scryer/cli/issues/set_input_from_input_file_stream.stdin b/tests/scryer/cli/issues/set_input_from_input_file_stream.stdin
new file mode 100644
index 00000000..e69de29b
diff --git a/tests/scryer/cli/issues/set_input_from_input_file_stream.stdout b/tests/scryer/cli/issues/set_input_from_input_file_stream.stdout
new file mode 100644
index 00000000..f32a5804
--- /dev/null
+++ b/tests/scryer/cli/issues/set_input_from_input_file_stream.stdout
@@ -0,0 +1 @@
+true
\ No newline at end of file
diff --git a/tests/scryer/cli/issues/set_input_from_input_file_stream.toml b/tests/scryer/cli/issues/set_input_from_input_file_stream.toml
new file mode 100644
index 00000000..e488fd1f
--- /dev/null
+++ b/tests/scryer/cli/issues/set_input_from_input_file_stream.toml
@@ -0,0 +1 @@
+args = ["-f", "--no-add-history", "-g", "consult('set_input_from_top-level.pl').", "-g", "halt."]